Dinuclear metal phosphonates and -phosphates

The reaction of Cu(II) or Cd(II) salts with 2,4,6-iPr₃C₆H₂PO₃H₂, 2,4,6-iPr₃C₆H₂CH₂PO₃H₂ or 2,6-iPr₂C₆H₃OPO₃H₂ in the presence of strong chelating nitrogen ligands such as 2,2′-bipyridine (bpy), 1,10-phenanthroline (phen), 2-pyridylpyrazole (pypz) or 3,5-dimethyl pyrazole (dmpz) as the ancillary ligands afforded dinuclear copper or cadmium complexes [Cu₂(2,4,6-iPr₃C₆H₂PO₃H)₄(bpy)₂] (4), [Cu₂(2,6-iPr₂C₆H₃OPO₃H)₂(bpy)₂(OAc)₂(CH₃OH)₂]·(CH₃OH) (5), [Cd₂(2,6-iPr₂C₆H₃OPO₃H)₄ (bpy)₂(CH₃OH)₂]·2(CH₃OH) (6), [Cd₂(2,6-iPr₂C₆H₃OPO₃H)₄(phen)₂] (7), [Cu₂(2,6-iPr₂C₆H₃OPO₃H)₂(PyPz)₂(CH₃OH)₂] (8) and [Cu₂(2,4,6-iPr₃C₆H₂CH₂PO₃H)₂(DMPz)₂Cl₂]·(CH₃OH) (9) The molecular structures of 4-7 are grossly similar. The common structural features in these complexes are that the two metal centers are bridged by two bidentate [RPO₂(OH)]⁻ ligands generating a central eight-membered ring. Each of the metal centers also contains a chelating nitrogen ligand and a monodentate phosphonate or a phosphate ligand. In 5 and 6 other terminal ancillary ligands are also present. In compound 8, each of the two copper centers contains a monodentate [RPO₂(OH)]⁻ ligand along with a molecule of methanol. The two coppers are bridged by two monoanionic pyridylpyrazole ligands. The molecular structure of 9 is similar to that of 4-7. However, in 9 each of the two copper centers contain only terminal monodentate ligands in the form of two chlorides and a pyrazole. Magnetic studies on all of these copper complexes reveal an anti-ferromagnetic behavior at low temperatures. In addition, these complexes were found to be artificial nucleases and can convert supercoiled pBR322 DNA form I into nick form II in 1 min in the presence of an external oxidant through a hydrolytic and/or an oxidative pathway.     

Syntheses, structures and magnetic properties of μ1,5 dicyanamide bridged coordination polymers of copper(II) and nickel(II) containing a tetradentate N-donor Schiff base

One neutral [Cu₂(enbzpy)(dca)₄]_n (1) and one polycationic [Ni(enbzpy)(dca)]_n(ClO₄)_n (2) [enbzpy = N,N′-(bis-(pyridin-2-yl)benzylidene)ethane-1,2-diamine; dca = dicyanamide] 1D coordination polymers are synthesized and characterized. X-ray structural analyses reveal each copper(II) center in 1 to adopt a distorted square pyramidal geometry with a CuN₅ chromophore coordinated through two N atoms of the Schiff base behaving as a binucleting bis(bidentate) ligand and three nitrile N atoms of one terminal and two single μ_1,5 dca units leading to a 1D ladder structure. In 2, each nickel(II) center has a distorted octahedral coordination environment with an NiN₆ chromophore bound by four N atoms of enbzpy through tetradentate chelation and two nitrile N atoms of two different single bridged μ_1,5 dca units; the latter connects other neighboring metal centers in a non-ending fashion affording a 1D chain. Variable-temperature magnetic susceptibility measurements of 1 and 2 show weak antiferromagnetic interactions among the metal centers through μ_1,5 dca bridges.     

Isolation and characterization of an immunoenhancing glucan from alkaline extract of an edible mushroom, Lentinus squarrosulus (Mont.) Singer

A water-soluble glucan, isolated from the alkaline extract of the fruit bodies of an edible mushroom, Lentinus squarrosulus (Mont.) Singer was found to consist of (1→3,6)-linked, (1→3)-linked, (1→6)-linked, and terminal β-d-glucopyranosyl moieties in a relative proportion of approximately 1:2:1:1. This polysaccharide showed optimum activation of macrophages as well as splenocytes and thymocytes at 10 μg/mL. Structural investigation was carried out using sugar analysis, methylation analysis, periodate oxidation study, and NMR experiments (¹H, ¹³C, DEPT-135, DQF-COSY, TOCSY, NOESY, ROESY, HMQC, and HMBC). On the basis of above-mentioned experiments, the structure of the repeating unit of the polysaccharide was established as:     

Characterization of dual substrate binding sites in the homodimeric structure of Escherichia coli mRNA interferase MazF

MazF and MazE constitute a so-called addiction module that is critical for bacterial growth arrest and eventual cell death in response to stress. The MazF toxin was recently shown to possess mRNA interferase (MIase) activity, and acts as a protein synthesis inhibitor by cleaving cellular mRNA. As a cognate regulator, the short-lived antitoxin, MazE, inhibits MazF MIase activity and hence maintains the delicate homeostasis between these two components. In the present study, we have shown that the MazF homodimer contains two symmetric binding sites, each of which is capable of interacting with a MazE C-terminal peptide, MazEp(54-77). The slow exchange phenomenon between free and peptide-bound MazF on the NMR timescale indicates relatively high affinities for MazEp(54-77) at both sites (Kd,K'd < 10(-7) M). However, the observed sequential binding behavior suggests a negative cooperativity between the two sites (Kd < K'd). A 13 base single-stranded DNA, employed as an uncleavable RNA substrate analog, can also bind to both sites on the MazF homodimer with moderate affinity (Kd approximately 10(-5) -10(-6) M). Chemical shift perturbation data deduced from NMR experiments indicates that the two binding sites for the MazEp peptide coincided with those for the single-stranded DNA competitive inhibitor. These dual substrate-binding sites are located on the concave interface of the MazF homodimer, consisting of a highly basic region underneath the S1-S2 loop and two hydrophobic regions containing the H1 helix of one subunit and the S3-S4 loop of the opposing subunit. We show that the MazF homodimer is a bidentate endoribonuclease equipped with two identical binding sites for mRNA processing and that a single MazE molecule occupying one of the binding sites can affect the conformation of both sites, hence efficiently hindering the activity of MazF.     

Stathmin strongly increases the minus end catastrophe frequency and induces rapid treadmilling of bovine brain microtubules at steady state in vitro

Stathmin is a ubiquitous microtubule destabilizing protein that is believed to play an important role linking cell signaling to the regulation of microtubule dynamics. Here we show that stathmin strongly destabilizes microtubule minus ends in vitro at steady state, conditions in which the soluble tubulin and microtubule levels remain constant. Stathmin increased the minus end catastrophe frequency approximately 13-fold at a stathmin:tubulin molar ratio of 1:5. Stathmin steady-state catastrophe-promoting activity was considerably stronger at the minus ends than at the plus ends. Consistent with its ability to destabilize minus ends, stathmin strongly increased the treadmilling rate of bovine brain microtubules. By immunofluorescence microscopy, we also found that stathmin binds to purified microtubules along their lengths in vitro. Co-sedimentation of purified microtubules polymerized in the presence of a 1:5 initial molar ratio of stathmin to tubulin yielded a binding stoichiometry of 1 mol of stathmin per approximately 14.7 mol of tubulin in the microtubules. The results firmly establish that stathmin can increase the steady-state catastrophe frequency by a direct action on microtubules, and furthermore, they indicate that an important regulatory action of stathmin in cells may be to destabilize microtubule minus ends.     

Physical and functional interaction between human oxidized base-specific DNA glycosylase NEIL1 and flap endonuclease 1

The S phase-specific activation of NEIL1 and not of the other DNA glycosylases responsible for repairing oxidatively damaged bases in mammalian genomes and the activation of NEIL1 by proliferating cell nuclear antigen (PCNA) suggested preferential action by NEIL1 in oxidized base repair during DNA replication. Here we show that NEIL1 interacts with flap endonuclease 1 (FEN-1), an essential component of the DNA replication. FEN-1 is present in the NEIL1 immunocomplex isolated from human cell extracts, and the two proteins colocalize in the nucleus. FEN-1 stimulates the activity of NEIL1 in vitro in excising 5-hydroxyuracil from duplex, bubble, forked, and single-stranded DNA substrates by up to 5-fold. The disordered region near the C terminus of NEIL1, which is dispensable for activity, is necessary and sufficient for high affinity binding to FEN-1 (K(D) approximately = 0.2 microm). The interacting interface of FEN-1 is localized in its disordered C-terminal region uniquely present in mammalian orthologs. Fine structure mapping identified several Lys and Arg residues in this region that form salt bridges with Asp and Glu residues in NEIL1. NEIL1 was previously shown to initiate single nucleotide excision repair, which does not require FEN-1 or PCNA. The present study shows that NEIL1 could also participate in strand displacement repair synthesis (long patch repair (LP-BER)) mediated by FEN-1 and stimulated by PCNA. Interaction between NEIL1 and FEN-1 is essential for efficient NEIL1-initiated LP-BER. These studies strongly implicate NEIL1 in a distinct subpathway of LP-BER in replicating genomes.